This is an interesting article. It appears that mycobacteria post transplant is rare. Out of 2000+ patients, 7 of them had rapidly growing atypical mycobacteria in their central lines. This article was written 10 years ago. I'm not sure if the incidence has increased. There is not much more info.
http://www.nature.com/bmt/journal/v19/n5/pdf/1700686a.pdf
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